Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-dicitrate abc transporter permease fecc | F126LOC_RS15725 | Not Available | Positive | 3632001 - 3632996 | 35080.2 |
| fe(3+) dicitrate abc transporter permease subunit fecd | F126LOC_RS15730 | Not Available | Positive | 3632996 - 3633955 | 34152.3 |
| fe(3+) dicitrate abc transporter atp-binding protein fece | F126LOC_RS15735 | Not Available | Positive | 3633956 - 3634723 | 27963.2 |
| glutathione s-transferase family protein | F126LOC_RS15740 | Not Available | Positive | 3634920 - 3635549 | 23881.6 |
| hcp family type vi secretion system effector | F126LOC_RS15745 | Not Available | Positive | 3635875 - 3636354 | 18170.7 |
| hypothetical protein | F126LOC_RS15750 | Not Available | Negative | 3636557 - 3637252 | 27182.2 |
| hypothetical protein | F126LOC_RS15755 | Not Available | Negative | 3637692 - 3637964 | 10546.0 |
| dna mismatch repair protein muts | F126LOC_RS15760 | Not Available | Positive | 3638489 - 3641053 | 95123.3 |
| envelope stress response activation lipoprotein nlpe | F126LOC_RS15765 | Not Available | Negative | 3641116 - 3641811 | 25273.2 |
| yaeq family protein | F126LOC_RS15770 | Not Available | Negative | 3641885 - 3642439 | 21075.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
