Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ggdef domain-containing protein | F126LOC_RS15675 | Not Available | Positive | 3620703 - 3621410 | 26593.6 |
| lysr family transcriptional regulator | F126LOC_RS15680 | Not Available | Positive | 3621491 - 3622387 | 32655.3 |
| sulfite exporter taue/safe family protein | F126LOC_RS15685 | Not Available | Negative | 3622384 - 3623109 | 25455.6 |
| lytic murein transglycosylase b | F126LOC_RS15690 | Not Available | Negative | 3623461 - 3624546 | 40017.5 |
| zinc ribbon domain-containing protein yjdm | F126LOC_RS15695 | Not Available | Negative | 3624685 - 3625026 | 12247.6 |
| eal domain-containing protein | F126LOC_RS15700 | Not Available | Negative | 3625147 - 3626769 | 61350.1 |
| ferric citrate uptake sigma factor feci | F126LOC_RS15705 | Not Available | Positive | 3627084 - 3627605 | 19414.3 |
| ferric citrate uptake sigma factor regulator fecr | F126LOC_RS15710 | Not Available | Positive | 3627602 - 3628558 | 36120.7 |
| tonb-dependent fe(3+) dicitrate receptor feca | F126LOC_RS15715 | Not Available | Positive | 3628651 - 3630999 | 85728.7 |
| fe(3+) dicitrate abc transporter substrate-binding protein fecb | F126LOC_RS15720 | Not Available | Positive | 3631090 - 3632004 | 33457.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
