Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i secretion system permease/atpase | F126LOC_RS15625 | Not Available | Positive | 3608270 - 3610408 | 78668.6 |
| hlyd family type i secretion periplasmic adaptor subunit | F126LOC_RS15630 | Not Available | Positive | 3610420 - 3611589 | 43408.3 |
| glycoside hydrolase family 28 protein | F126LOC_RS15635 | Not Available | Negative | 3611684 - 3612892 | 42706.7 |
| pectate lyase peli | F126LOC_RS15640 | Not Available | Positive | 3613470 - 3614513 | 37120.7 |
| mannonate dehydratase | F126LOC_RS15645 | Not Available | Negative | 3614617 - 3615813 | 45001.6 |
| fcd domain-containing protein | F126LOC_RS15650 | Not Available | Negative | 3616225 - 3616959 | 27951.2 |
| alpha/beta hydrolase | F126LOC_RS15655 | Not Available | Positive | 3617172 - 3618365 | 45207.8 |
| spoiie family protein phosphatase | F126LOC_RS15660 | Not Available | Positive | 3618450 - 3619694 | 46673.0 |
| siab family protein kinase | F126LOC_RS15665 | Not Available | Positive | 3619708 - 3620262 | 20832.1 |
| duf1987 domain-containing protein | F126LOC_RS15670 | Not Available | Positive | 3620264 - 3620716 | 17106.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
