Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | F126LOC_RS15575 | Not Available | Positive | 3582952 - 3583698 | 28231.7 |
| pfkb family carbohydrate kinase | F126LOC_RS15580 | Not Available | Negative | 3583672 - 3584649 | 34116.7 |
| adp-ribosylglycohydrolase family protein | F126LOC_RS15585 | Not Available | Negative | 3584649 - 3585650 | 35415.2 |
| alpha/beta hydrolase | F126LOC_RS15590 | Not Available | Negative | 3585647 - 3586926 | 46589.1 |
| pyrimidine/purine nucleoside phosphorylase | F126LOC_RS15595 | Not Available | Negative | 3587189 - 3587473 | 10175.2 |
| shikimate kinase arol | F126LOC_RS15600 | Not Available | Negative | 3587613 - 3588134 | 18852.6 |
| type ii asparaginase | F126LOC_RS15605 | Not Available | Negative | 3588418 - 3589458 | 36513.8 |
| multidrug abc transporter permease/atp-binding protein | F126LOC_RS15610 | Not Available | Negative | 3589674 - 3591320 | 61659.2 |
| ig-like domain-containing protein | F126LOC_RS15615 | Not Available | Positive | 3592042 - 3606654 | 490516.0 |
| tolc family outer membrane protein | F126LOC_RS15620 | Not Available | Positive | 3606791 - 3608230 | 52756.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
