Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease vii small subunit | F126LOC_RS15425 | Not Available | Positive | 3547310 - 3547558 | 9229.76 |
| (2e,6e)-farnesyl diphosphate synthase | F126LOC_RS15430 | Not Available | Positive | 3547555 - 3548466 | 32521.8 |
| 1-deoxy-d-xylulose-5-phosphate synthase | F126LOC_RS15435 | Not Available | Positive | 3548485 - 3550350 | 67642.3 |
| phosphatidylglycerophosphatase a | F126LOC_RS15440 | Not Available | Negative | 3550419 - 3550955 | 20009.8 |
| thiamine-phosphate kinase | F126LOC_RS15445 | Not Available | Negative | 3550930 - 3551910 | 35637.2 |
| transcription antitermination factor nusb | F126LOC_RS15450 | Not Available | Negative | 3551979 - 3552398 | 15734.0 |
| 6,7-dimethyl-8-ribityllumazine synthase | F126LOC_RS15455 | Not Available | Negative | 3552423 - 3552899 | 16481.9 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | F126LOC_RS15460 | Not Available | Negative | 3553010 - 3554146 | 41134.5 |
| transcriptional regulator nrdr | F126LOC_RS15465 | Not Available | Negative | 3554182 - 3554631 | 17230.9 |
| duf3251 domain-containing protein | F126LOC_RS15470 | Not Available | Positive | 3554851 - 3555420 | 20448.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
