Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-hairpin-helix domain-containing protein | F126LOC_RS15325 | Not Available | Negative | 3523656 - 3524021 | 12473.1 |
| peptidylprolyl isomerase | F126LOC_RS15330 | Not Available | Negative | 3524160 - 3526040 | 68757.9 |
| nucleoid-associated protein hu-beta | F126LOC_RS15335 | Not Available | Negative | 3526309 - 3526581 | 9354.19 |
| endopeptidase la | F126LOC_RS15340 | Not Available | Negative | 3526779 - 3529160 | 88225.4 |
| atp-dependent protease atp-binding subunit clpx | F126LOC_RS15345 | Not Available | Negative | 3529353 - 3530627 | 46465.8 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | F126LOC_RS15350 | Not Available | Negative | 3530791 - 3531414 | 23022.9 |
| trigger factor | F126LOC_RS15355 | Not Available | Negative | 3531981 - 3533285 | 48113.2 |
| transcriptional regulator bola | F126LOC_RS15360 | Not Available | Negative | 3533600 - 3533914 | 11339.6 |
| lipoprotein | F126LOC_RS15365 | Not Available | Positive | 3534239 - 3534817 | 20772.0 |
| muropeptide mfs transporter ampg | F126LOC_RS15370 | Not Available | Positive | 3534877 - 3536364 | 54348.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
