Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybay family lipoprotein | F126LOC_RS15275 | Not Available | Negative | 3512849 - 3513430 | 20462.8 |
| acyl-coa thioesterase ii | F126LOC_RS15280 | Not Available | Positive | 3513643 - 3514506 | 32809.0 |
| ammonium transporter amtb | F126LOC_RS15285 | Not Available | Negative | 3514646 - 3515932 | 44541.1 |
| p-ii family nitrogen regulator | F126LOC_RS15290 | Not Available | Negative | 3515972 - 3516310 | 12275.9 |
| smdb family multidrug efflux abc transporter permease/atp-binding protein | F126LOC_RS15295 | Not Available | Negative | 3516671 - 3518449 | 65408.3 |
| smda family multidrug abc transporter permease/atp-binding protein | F126LOC_RS15300 | Not Available | Negative | 3518442 - 3520211 | 65838.5 |
| lrp/asnc family transcriptional regulator | F126LOC_RS15305 | Not Available | Negative | 3520290 - 3520751 | 17637.5 |
| plp-dependent cysteine synthase family protein | F126LOC_RS15310 | Not Available | Positive | 3521121 - 3522197 | 39846.1 |
| 7-cyano-7-deazaguanine synthase quec | F126LOC_RS15315 | Not Available | Positive | 3522360 - 3523055 | 25352.1 |
| acyl-coa thioesterase | F126LOC_RS15320 | Not Available | Negative | 3523152 - 3523550 | 15260.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
