Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| triose-phosphate isomerase | F126LOC_RS00725 | Not Available | Negative | 167333 - 168100 | 26809.0 |
| yiiq family protein | F126LOC_RS00730 | Not Available | Negative | 168266 - 168865 | 21873.2 |
| duf805 domain-containing protein | F126LOC_RS00735 | Not Available | Positive | 169103 - 169525 | 16164.1 |
| ferredoxin--nadp(+) reductase | F126LOC_RS00740 | Not Available | Negative | 169544 - 170290 | 27748.5 |
| class ii fructose-bisphosphatase | F126LOC_RS00745 | Not Available | Negative | 170408 - 171418 | 36084.9 |
| glycerol kinase glpk | F126LOC_RS00750 | Not Available | Negative | 171557 - 173068 | 55687.2 |
| mip/aquaporin family protein | F126LOC_RS00755 | Not Available | Negative | 173122 - 173961 | 29381.3 |
| septal ring assembly protein zapb | F126LOC_RS00760 | Not Available | Positive | 174552 - 174791 | 9131.89 |
| ribonuclease e activity regulator rraa | F126LOC_RS00765 | Not Available | Negative | 174910 - 175395 | 17315.4 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | F126LOC_RS00770 | Not Available | Negative | 175530 - 176447 | 32671.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
