Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cys-trna(pro)/cys-trna(cys) deacylase ybak | F126LOC_RS15125 | Not Available | Positive | 3475941 - 3476420 | 17136.8 |
| glycoside hydrolase family 28 protein | F126LOC_RS15130 | Not Available | Negative | 3476654 - 3478036 | 50127.3 |
| gtpase | F126LOC_RS15135 | Not Available | Negative | 3478318 - 3479304 | 36383.4 |
| ybdd/yjix family protein | F126LOC_RS15140 | Not Available | Negative | 3479321 - 3479524 | 7612.13 |
| carbon starvation csta family protein | F126LOC_RS15145 | Not Available | Negative | 3479670 - 3481823 | 76554.5 |
| discoidin domain-containing protein | F126LOC_RS15150 | Not Available | Negative | 3482116 - 3484161 | 72061.7 |
| discoidin domain-containing protein | F126LOC_RS15155 | Not Available | Negative | 3484327 - 3486345 | 72306.1 |
| discoidin domain-containing protein | F126LOC_RS15160 | Not Available | Negative | 3486509 - 3488521 | 71454.6 |
| discoidin domain-containing protein | F126LOC_RS15165 | Not Available | Negative | 3488685 - 3490700 | 71601.9 |
| bifunctional udp-sugar hydrolase/5'-nucleotidase usha | F126LOC_RS15170 | Not Available | Negative | 3490934 - 3492583 | 60670.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
