Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,4-dihydroxy-2-naphthoyl-coa synthase | F126LOC_RS15025 | Not Available | Negative | 3448594 - 3449451 | 31500.6 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | F126LOC_RS15030 | Not Available | Negative | 3449457 - 3450257 | 29375.1 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | F126LOC_RS15035 | Not Available | Negative | 3450245 - 3451927 | 60747.7 |
| isochorismate synthase menf | F126LOC_RS15040 | Not Available | Negative | 3452148 - 3453470 | 49293.3 |
| mfs transporter | F126LOC_RS15045 | Not Available | Positive | 3453872 - 3455041 | 40210.8 |
| phosphotransferase rcsd | F126LOC_RS15050 | Not Available | Positive | 3455058 - 3457748 | 101624.0 |
| response regulator transcription factor rcsb | F126LOC_RS15055 | Not Available | Positive | 3457757 - 3458407 | 23484.7 |
| two-component system sensor histidine kinase rcsc | F126LOC_RS15060 | Not Available | Negative | 3458445 - 3461300 | 106749.0 |
| dna topoisomerase (atp-hydrolyzing) subunit a | F126LOC_RS15065 | Not Available | Negative | 3461416 - 3464055 | 97600.7 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | F126LOC_RS15070 | Not Available | Positive | 3464341 - 3465060 | 26722.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
