Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transporter atp-binding protein ybba | F126LOC_RS14975 | Not Available | Negative | 3438728 - 3439459 | 26233.3 |
| multifunctional acyl-coa thioesterase i/protease i/lysophospholipase l1 | F126LOC_RS14980 | Not Available | Positive | 3439385 - 3440065 | 25585.2 |
| sdr family oxidoreductase | F126LOC_RS14985 | Not Available | Positive | 3440094 - 3440864 | 27891.8 |
| co-chaperone ybbn | F126LOC_RS14990 | Not Available | Positive | 3440975 - 3441835 | 32205.6 |
| nicotinamide mononucleotide deamidase-related protein yfay | F126LOC_RS14995 | Not Available | Negative | 3442250 - 3443443 | 43200.1 |
| tyrosine transporter tyrp | F126LOC_RS15000 | Not Available | Positive | 3443666 - 3444874 | 42913.3 |
| yfaz family outer membrane protein | F126LOC_RS15005 | Not Available | Negative | 3445148 - 3445687 | 18749.0 |
| catalase | F126LOC_RS15010 | Not Available | Positive | 3445937 - 3446149 | 8022.54 |
| o-succinylbenzoate--coa ligase | F126LOC_RS15015 | Not Available | Negative | 3446151 - 3447635 | 54080.4 |
| o-succinylbenzoate synthase | F126LOC_RS15020 | Not Available | Negative | 3447623 - 3448594 | 35528.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
