Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dnaa inactivator hda | F126LOC_RS14925 | Not Available | Negative | 3425453 - 3426160 | 26853.2 |
| uracil permease | F126LOC_RS14930 | Not Available | Negative | 3426260 - 3427549 | 44927.7 |
| uracil phosphoribosyltransferase | F126LOC_RS14935 | Not Available | Negative | 3427890 - 3428516 | 22511.7 |
| phosphoribosylformylglycinamidine cyclo-ligase | F126LOC_RS14940 | Not Available | Positive | 3428854 - 3429891 | 36817.0 |
| phosphoribosylglycinamide formyltransferase | F126LOC_RS14945 | Not Available | Positive | 3429891 - 3430529 | 23463.0 |
| abc transporter substrate-binding protein | F126LOC_RS14950 | Not Available | Positive | 3430819 - 3431925 | 41313.2 |
| tonb-dependent siderophore receptor | F126LOC_RS14955 | Not Available | Positive | 3431918 - 3434044 | 78211.7 |
| spermidine n1-acetyltransferase | F126LOC_RS14960 | Not Available | Positive | 3434212 - 3434787 | 22189.3 |
| is110 family transposase | F126LOC_RS14965 | Not Available | Negative | 3435001 - 3435987 | 36132.3 |
| putative abc transporter permease subunit ybbp | F126LOC_RS14970 | Not Available | Negative | 3436302 - 3438731 | 90021.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
