Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS14825 | Not Available | Positive | 3403188 - 3403559 | 13811.5 |
| abc transporter atp-binding protein/permease | F126LOC_RS14830 | Not Available | Negative | 3403609 - 3405411 | 67360.9 |
| tonb-dependent siderophore receptor | F126LOC_RS14835 | Not Available | Negative | 3405486 - 3407861 | 85396.8 |
| sigma-70 family rna polymerase sigma factor | F126LOC_RS14840 | Not Available | Positive | 3408271 - 3408792 | 19696.7 |
| fecr family protein | F126LOC_RS14845 | Not Available | Positive | 3408802 - 3409770 | 35963.1 |
| energy transducer tonb | F126LOC_RS14850 | Not Available | Positive | 3409913 - 3410794 | 31336.7 |
| mota/tolq/exbb proton channel family protein | F126LOC_RS14855 | Not Available | Positive | 3410873 - 3411613 | 26998.7 |
| exbd/tolr family protein | F126LOC_RS14860 | Not Available | Positive | 3411628 - 3412050 | 15390.7 |
| tldd/pmba family protein | F126LOC_RS14865 | Not Available | Positive | 3412212 - 3413576 | 48213.5 |
| metalloprotease tldd | F126LOC_RS14870 | Not Available | Positive | 3413611 - 3415056 | 51539.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
