Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell-envelope stress modulator cpxp | F126LOC_RS00675 | Not Available | Positive | 159058 - 159582 | 19628.6 |
| type ii toxin-antitoxin system hica family toxin | F126LOC_RS00680 | Not Available | Positive | 159819 - 160094 | 10051.3 |
| type ii toxin-antitoxin system hicb family antitoxin | F126LOC_RS00685 | Not Available | Positive | 160091 - 160453 | 13505.1 |
| sugar transporter | F126LOC_RS00690 | Not Available | Positive | 160827 - 162014 | 42005.3 |
| cdf family cation-efflux transporter fief | F126LOC_RS00695 | Not Available | Positive | 162087 - 162989 | 32819.0 |
| 6-phosphofructokinase | F126LOC_RS00700 | Not Available | Positive | 163197 - 164159 | 34931.1 |
| n-carbamoylputrescine amidase | F126LOC_RS00705 | Not Available | Positive | 164440 - 165324 | 32753.8 |
| agmatine deiminase | F126LOC_RS00710 | Not Available | Positive | 165328 - 166431 | 40799.1 |
| brna antitoxin family protein | F126LOC_RS00715 | Not Available | Negative | 166567 - 166881 | 11772.3 |
| brnt family toxin | F126LOC_RS00720 | Not Available | Negative | 166868 - 167098 | 8790.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
