Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan dd-transpeptidase mrda | F126LOC_RS14720 | Not Available | Positive | 3382537 - 3384441 | 71476.2 |
| peptidoglycan glycosyltransferase mrdb | F126LOC_RS14725 | Not Available | Positive | 3384451 - 3385563 | 40652.8 |
| endolytic peptidoglycan transglycosylase rlpa | F126LOC_RS14730 | Not Available | Positive | 3385577 - 3386701 | 39124.8 |
| d-alanyl-d-alanine carboxypeptidase daca | F126LOC_RS14735 | Not Available | Positive | 3386868 - 3388079 | 44061.8 |
| duf493 family protein ybed | F126LOC_RS14740 | Not Available | Positive | 3388230 - 3388493 | 9846.98 |
| lipoyl(octanoyl) transferase lipb | F126LOC_RS14745 | Not Available | Positive | 3388670 - 3389353 | 25178.6 |
| lipoyl synthase | F126LOC_RS14750 | Not Available | Positive | 3389581 - 3390546 | 36194.8 |
| sec-independent protein translocase subunit tata | F126LOC_RS14755 | Not Available | Negative | 3390630 - 3390827 | 6838.41 |
| fluoride efflux transporter crcb | F126LOC_RS14760 | Not Available | Positive | 3391263 - 3391646 | 13404.7 |
| transcription antiterminator/rna stability regulator cspe | F126LOC_RS14765 | Not Available | Negative | 3391728 - 3391937 | 7424.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
