Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate/aspartate abc transporter permease gltk | F126LOC_RS14670 | Not Available | Positive | 3373050 - 3373724 | 25006.5 |
| amino acid abc transporter atp-binding protein | F126LOC_RS14675 | Not Available | Positive | 3373724 - 3374449 | 26763.7 |
| is110 family transposase | F126LOC_RS14680 | Not Available | Positive | 3374760 - 3375746 | 36132.3 |
| zinc ribbon-containing protein | F126LOC_RS14685 | Not Available | Negative | 3375898 - 3376380 | 18750.0 |
| leucine--trna ligase | F126LOC_RS14690 | Not Available | Positive | 3376690 - 3379272 | 97067.6 |
| lps assembly lipoprotein lpte | F126LOC_RS14695 | Not Available | Positive | 3379287 - 3379841 | 20387.5 |
| dna polymerase iii subunit delta | F126LOC_RS14700 | Not Available | Positive | 3379838 - 3380863 | 38859.4 |
| nicotinate-nucleotide adenylyltransferase | F126LOC_RS14705 | Not Available | Positive | 3380830 - 3381519 | 25773.7 |
| ribosome silencing factor | F126LOC_RS14710 | Not Available | Positive | 3381714 - 3382031 | 11428.6 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | F126LOC_RS14715 | Not Available | Positive | 3382033 - 3382503 | 17656.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
