Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosamine-6-phosphate deaminase | F126LOC_RS14570 | Not Available | Positive | 3356190 - 3356990 | 29621.8 |
| n-acetylglucosamine-6-phosphate deacetylase | F126LOC_RS14575 | Not Available | Positive | 3357009 - 3358154 | 41251.4 |
| dna-binding transcriptional regulator nagc | F126LOC_RS14580 | Not Available | Positive | 3358252 - 3359475 | 44368.8 |
| asparagine synthase b | F126LOC_RS14585 | Not Available | Positive | 3359679 - 3361343 | 62738.3 |
| Trna-met | Not Available | Not Available | Positive | 3361563 - 3361639 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 3361647 - 3361731 | Not Available |
| Trna-gln | Not Available | Not Available | Positive | 3361788 - 3361862 | Not Available |
| Trna-gln | Not Available | Not Available | Positive | 3361898 - 3361972 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3362026 - 3362102 | Not Available |
| Trna-gln | Not Available | Not Available | Positive | 3362109 - 3362183 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
