Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama family transporter | F126LOC_RS14520 | Not Available | Positive | 3344135 - 3344563 | 14452.6 |
| phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent) | F126LOC_RS14525 | Not Available | Negative | 3344627 - 3346270 | 58583.3 |
| replication initiation negative regulator seqa | F126LOC_RS14530 | Not Available | Negative | 3346318 - 3346854 | 19942.9 |
| esterase | F126LOC_RS14535 | Not Available | Positive | 3347116 - 3347883 | 28740.5 |
| lexa regulated protein | F126LOC_RS14540 | Not Available | Positive | 3348174 - 3348455 | 10913.0 |
| methyl-accepting chemotaxis protein | F126LOC_RS14545 | Not Available | Negative | 3348574 - 3350241 | 59172.4 |
| flavodoxin flda | F126LOC_RS14550 | Not Available | Positive | 3351130 - 3351657 | 19530.7 |
| ferric iron uptake transcriptional regulator | F126LOC_RS14555 | Not Available | Positive | 3351988 - 3352437 | 17097.3 |
| glutamine--trna ligase | F126LOC_RS14560 | Not Available | Negative | 3352501 - 3354159 | 63233.6 |
| n-acetylglucosamine-specific pts transporter subunit iibc | F126LOC_RS14565 | Not Available | Negative | 3354335 - 3355831 | 53238.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
