Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | F126LOC_RS14470 | Not Available | Positive | 3331112 - 3332092 | 34874.9 |
| abc transporter permease | F126LOC_RS14475 | Not Available | Positive | 3332181 - 3333836 | 58407.2 |
| ybfa family protein | F126LOC_RS14480 | Not Available | Negative | 3334002 - 3334208 | 7992.9 |
| k(+)-transporting atpase subunit f | F126LOC_RS14485 | Not Available | Positive | 3334630 - 3334719 | 3242.26 |
| potassium-transporting atpase subunit kdpa | F126LOC_RS14490 | Not Available | Positive | 3334719 - 3336407 | 59289.8 |
| potassium-transporting atpase subunit kdpb | F126LOC_RS14495 | Not Available | Positive | 3336423 - 3338567 | 75790.1 |
| potassium-transporting atpase subunit kdpc | F126LOC_RS14500 | Not Available | Positive | 3338587 - 3339162 | 20572.7 |
| is110 family transposase | F126LOC_RS14505 | Not Available | Positive | 3339472 - 3340458 | 36132.3 |
| two-component system sensor histidine kinase kdpd | F126LOC_RS14510 | Not Available | Positive | 3340604 - 3343366 | 101777.0 |
| two-component system response regulator kdpe | F126LOC_RS14515 | Not Available | Positive | 3343372 - 3344052 | 25670.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
