Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yfap family protein | F126LOC_RS14370 | Not Available | Negative | 3309213 - 3310370 | 41728.1 |
| succinate--coa ligase subunit alpha | F126LOC_RS14375 | Not Available | Negative | 3310609 - 3311481 | 29766.2 |
| adp-forming succinate--coa ligase subunit beta | F126LOC_RS14380 | Not Available | Negative | 3311481 - 3312647 | 41197.7 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | F126LOC_RS14385 | Not Available | Negative | 3312850 - 3314076 | 44424.2 |
| 2-oxoglutarate dehydrogenase e1 component | F126LOC_RS14390 | Not Available | Negative | 3314092 - 3316899 | 105557.0 |
| succinate dehydrogenase iron-sulfur subunit | F126LOC_RS14395 | Not Available | Negative | 3317175 - 3317891 | 26767.4 |
| succinate dehydrogenase flavoprotein subunit | F126LOC_RS14400 | Not Available | Negative | 3317908 - 3319674 | 64416.5 |
| succinate dehydrogenase membrane anchor subunit | F126LOC_RS14405 | Not Available | Negative | 3319674 - 3320021 | 12816.3 |
| succinate dehydrogenase cytochrome b556 subunit | F126LOC_RS14410 | Not Available | Negative | 3320015 - 3320404 | 14128.7 |
| citrate synthase | F126LOC_RS14415 | Not Available | Positive | 3321039 - 3322325 | 48258.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
