Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan-associated lipoprotein pal | F126LOC_RS14320 | Not Available | Negative | 3300475 - 3300984 | 18430.8 |
| tol-pal system beta propeller repeat protein tolb | F126LOC_RS14325 | Not Available | Negative | 3301025 - 3302317 | 45904.1 |
| cell envelope integrity protein tola | F126LOC_RS14330 | Not Available | Negative | 3302456 - 3303631 | 41177.1 |
| colicin uptake protein tolr | F126LOC_RS14335 | Not Available | Negative | 3303696 - 3304121 | 15340.8 |
| tol-pal system protein tolq | F126LOC_RS14340 | Not Available | Negative | 3304134 - 3304820 | 25416.9 |
| tol-pal system-associated acyl-coa thioesterase | F126LOC_RS14345 | Not Available | Negative | 3304817 - 3305221 | 15333.5 |
| cyd operon protein ybge | F126LOC_RS14350 | Not Available | Negative | 3305355 - 3305648 | 10932.8 |
| cytochrome bd-i oxidase subunit cydx | F126LOC_RS14355 | Not Available | Negative | 3305645 - 3305761 | 4173.02 |
| cytochrome d ubiquinol oxidase subunit ii | F126LOC_RS14360 | Not Available | Negative | 3305778 - 3306917 | 42154.4 |
| cytochrome ubiquinol oxidase subunit i | F126LOC_RS14365 | Not Available | Negative | 3306931 - 3308499 | 58065.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
