Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sn-glycerol-3-phosphate abc transporter permease ugpe | F126LOC_RS00625 | Not Available | Positive | 148958 - 149803 | 31642.7 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | F126LOC_RS00630 | Not Available | Positive | 149829 - 150902 | 39690.3 |
| glycerophosphodiester phosphodiesterase | F126LOC_RS00635 | Not Available | Positive | 150902 - 151651 | 27236.6 |
| aec family transporter | F126LOC_RS00640 | Not Available | Positive | 151763 - 152719 | 34065.3 |
| hypothetical protein | F126LOC_RS00645 | Not Available | Negative | 152733 - 153029 | 11200.4 |
| trna (cytidine(34)-2'-o)-methyltransferase | F126LOC_RS00650 | Not Available | Positive | 153226 - 153690 | 17277.5 |
| duf3142 domain-containing protein | F126LOC_RS00655 | Not Available | Negative | 153701 - 154501 | 30259.0 |
| hypothetical protein | F126LOC_RS00660 | Not Available | Negative | 154471 - 156645 | 80867.8 |
| envelope stress sensor histidine kinase cpxa | F126LOC_RS00665 | Not Available | Negative | 156839 - 158209 | 51848.4 |
| envelope stress response regulator transcription factor cpxr | F126LOC_RS00670 | Not Available | Negative | 158206 - 158904 | 26361.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
