Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal phosphatase | F126LOC_RS14170 | Not Available | Positive | 3269873 - 3270694 | 30310.0 |
| glucokinase | F126LOC_RS14175 | Not Available | Negative | 3270764 - 3271729 | 34415.2 |
| mfs transporter | F126LOC_RS14180 | Not Available | Positive | 3271968 - 3273161 | 43596.5 |
| sugar phosphate isomerase/epimerase family protein | F126LOC_RS14185 | Not Available | Positive | 3273292 - 3274362 | 39867.9 |
| gfo/idh/moca family protein | F126LOC_RS14190 | Not Available | Positive | 3274359 - 3275510 | 42485.3 |
| laci family dna-binding transcriptional regulator | F126LOC_RS14195 | Not Available | Positive | 3275635 - 3276615 | 35262.1 |
| sugar phosphate isomerase/epimerase family protein | F126LOC_RS14200 | Not Available | Negative | 3276692 - 3277555 | 32100.0 |
| molybdenum abc transporter atp-binding protein modc | F126LOC_RS14205 | Not Available | Negative | 3277793 - 3278851 | 39261.8 |
| molybdate abc transporter permease subunit | F126LOC_RS14210 | Not Available | Negative | 3278851 - 3279540 | 24901.0 |
| molybdate abc transporter substrate-binding protein | F126LOC_RS14215 | Not Available | Negative | 3279540 - 3280310 | 27827.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
