Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-sulfur cluster carrier protein apbc | F126LOC_RS14120 | Not Available | Negative | 3255810 - 3256919 | 39442.8 |
| methionine--trna ligase | F126LOC_RS14125 | Not Available | Positive | 3257143 - 3259173 | 75779.5 |
| formate dehydrogenase-n subunit alpha | F126LOC_RS14130 | Not Available | Positive | 3259454 - 3262501 | 112907.0 |
| formate dehydrogenase subunit beta | F126LOC_RS14135 | Not Available | Positive | 3262514 - 3263422 | 33285.4 |
| formate dehydrogenase-n subunit gamma | F126LOC_RS14140 | Not Available | Positive | 3263415 - 3264050 | 24691.4 |
| is110 family transposase | F126LOC_RS14145 | Not Available | Negative | 3264292 - 3265278 | 36132.3 |
| sugar abc transporter substrate-binding protein | F126LOC_RS14150 | Not Available | Positive | 3265815 - 3266891 | 38329.9 |
| lvivd repeat-containing protein | F126LOC_RS14155 | Not Available | Positive | 3266906 - 3268156 | 45882.0 |
| 6-phosphogluconolactonase | F126LOC_RS14160 | Not Available | Negative | 3268212 - 3269210 | 36087.4 |
| Trna-ser | Not Available | Not Available | Positive | 3269512 - 3269599 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
