Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-1-phosphate thymidylyltransferase rfba | F126LOC_RS14070 | Not Available | Negative | 3242365 - 3243240 | 32543.3 |
| tyrosine-protein kinase wzc | F126LOC_RS14075 | Not Available | Negative | 3243379 - 3245553 | 80530.3 |
| protein-tyrosine-phosphatase | F126LOC_RS14080 | Not Available | Negative | 3245570 - 3246004 | 16085.4 |
| polysaccharide export protein | F126LOC_RS14085 | Not Available | Negative | 3246013 - 3247149 | 41652.1 |
| udp-n-acetylglucosamine--undecaprenyl-phosphate n-acetylglucosaminephosphotransferase | F126LOC_RS14090 | Not Available | Negative | 3247275 - 3248354 | 39917.5 |
| terc family protein | F126LOC_RS14095 | Not Available | Positive | 3249105 - 3250691 | 59442.5 |
| anaerobic c4-dicarboxylate transporter dcuc | F126LOC_RS14100 | Not Available | Negative | 3250774 - 3252126 | 46959.6 |
| outer membrane assembly protein asma | F126LOC_RS14105 | Not Available | Negative | 3252390 - 3254225 | 67102.5 |
| dctp deaminase | F126LOC_RS14110 | Not Available | Negative | 3254289 - 3254870 | 21334.6 |
| uridine kinase | F126LOC_RS14115 | Not Available | Negative | 3254978 - 3255619 | 24558.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
