Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | F126LOC_RS14020 | Not Available | Negative | 3232212 - 3233492 | 48179.8 |
| glycosyltransferase | F126LOC_RS14025 | Not Available | Negative | 3233492 - 3234520 | 38931.8 |
| glycosyltransferase | F126LOC_RS14030 | Not Available | Negative | 3234543 - 3235730 | 43628.5 |
| daph/dapd/glmu-related protein | F126LOC_RS14035 | Not Available | Negative | 3235727 - 3236218 | 17335.3 |
| oligosaccharide repeat unit polymerase | F126LOC_RS14040 | Not Available | Negative | 3236285 - 3237490 | 47202.2 |
| glycosyltransferase family 2 protein | F126LOC_RS14045 | Not Available | Negative | 3237492 - 3238352 | 33281.0 |
| o-antigen translocase | F126LOC_RS14050 | Not Available | Negative | 3238401 - 3239666 | 46609.4 |
| degt/dnrj/eryc1/strs family aminotransferase | F126LOC_RS14055 | Not Available | Negative | 3239663 - 3240775 | 41270.2 |
| formyltransferase family protein | F126LOC_RS14060 | Not Available | Negative | 3240772 - 3241965 | 45616.4 |
| sugar 3,4-ketoisomerase | F126LOC_RS14065 | Not Available | Negative | 3241968 - 3242360 | 14973.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
