Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yjbf family lipoprotein | F126LOC_RS13970 | Not Available | Negative | 3221796 - 3222473 | 25131.3 |
| hypothetical protein | F126LOC_RS13975 | Not Available | Negative | 3222549 - 3222842 | 8759.25 |
| nadp-dependent phosphogluconate dehydrogenase | F126LOC_RS13980 | Not Available | Negative | 3223291 - 3224697 | 51638.3 |
| sugar phosphate nucleotidyltransferase | F126LOC_RS13985 | Not Available | Negative | 3224928 - 3225824 | 32403.4 |
| phosphomannomutase cpsg | F126LOC_RS13990 | Not Available | Negative | 3226117 - 3227490 | 50803.6 |
| glycosyltransferase family 2 protein | F126LOC_RS13995 | Not Available | Negative | 3227497 - 3228243 | 27850.7 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | F126LOC_RS14000 | Not Available | Negative | 3228245 - 3229648 | 51867.8 |
| gdp-mannose mannosyl hydrolase | F126LOC_RS14005 | Not Available | Negative | 3229658 - 3230116 | 17752.9 |
| gdp-l-fucose synthase | F126LOC_RS14010 | Not Available | Negative | 3230118 - 3231080 | 36164.5 |
| gdp-mannose 4,6-dehydratase | F126LOC_RS14015 | Not Available | Negative | 3231083 - 3232192 | 41660.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
