Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murr/rpir family transcriptional regulator | F126LOC_RS13920 | Not Available | Positive | 3209506 - 3210363 | 31679.8 |
| putative quinol monooxygenase | F126LOC_RS13925 | Not Available | Positive | 3210412 - 3210717 | 11908.5 |
| abc transporter substrate-binding protein | F126LOC_RS13930 | Not Available | Positive | 3211044 - 3212147 | 41109.4 |
| diguanylate cyclase adra | F126LOC_RS13935 | Not Available | Negative | 3212298 - 3213359 | 39587.0 |
| bglg family transcription antiterminator lict | F126LOC_RS13940 | Not Available | Negative | 3213592 - 3214428 | 31465.2 |
| glycoside hydrolase family 1 protein | F126LOC_RS13945 | Not Available | Negative | 3214519 - 3215946 | 54277.7 |
| protease pro-enzyme activation domain-containing protein | F126LOC_RS13950 | Not Available | Negative | 3216274 - 3217902 | 58846.4 |
| chorismate mutase | F126LOC_RS13955 | Not Available | Negative | 3217921 - 3218478 | 20724.0 |
| yjbh domain-containing protein | F126LOC_RS13960 | Not Available | Negative | 3218866 - 3221007 | 79695.4 |
| capsule biosynthesis gfcc family protein | F126LOC_RS13965 | Not Available | Negative | 3221004 - 3221786 | 28728.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
