Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-deoxy-glucuronate isomerase | F126LOC_RS13870 | Not Available | Negative | 3194778 - 3195608 | 31401.6 |
| myo-inosose-2 dehydratase | F126LOC_RS13875 | Not Available | Negative | 3195697 - 3196587 | 32711.8 |
| bifunctional 5-dehydro-2-deoxygluconokinase/5-dehydro-2- deoxyphosphogluconate aldolase | F126LOC_RS13880 | Not Available | Negative | 3196815 - 3198719 | 70287.6 |
| gfo/idh/moca family protein | F126LOC_RS13885 | Not Available | Negative | 3198777 - 3199910 | 41038.8 |
| abc transporter permease | F126LOC_RS13890 | Not Available | Negative | 3199951 - 3200982 | 36645.7 |
| sugar abc transporter atp-binding protein | F126LOC_RS13895 | Not Available | Negative | 3200995 - 3202542 | 56424.2 |
| substrate-binding domain-containing protein | F126LOC_RS13900 | Not Available | Negative | 3202615 - 3203553 | 33040.4 |
| inositol 2-dehydrogenase | F126LOC_RS13905 | Not Available | Negative | 3203634 - 3204620 | 35903.8 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | F126LOC_RS13910 | Not Available | Negative | 3205378 - 3207309 | 70428.0 |
| coa-acylating methylmalonate-semialdehyde dehydrogenase | F126LOC_RS13915 | Not Available | Negative | 3207667 - 3209178 | 54255.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
