Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| non-ribosomal peptide synthetase | F126LOC_RS13770 | Not Available | Positive | 3155510 - 3176656 | 778091.0 |
| cyclic peptide export abc transporter | F126LOC_RS13775 | Not Available | Positive | 3176746 - 3178410 | 61201.4 |
| hypothetical protein | F126LOC_RS13780 | Not Available | Positive | 3178391 - 3178666 | 10753.6 |
| alpha/beta hydrolase | F126LOC_RS22380 | Not Available | Negative | 3178706 - 3178870 | 6447.39 |
| nad(p)-dependent oxidoreductase | F126LOC_RS13790 | Not Available | Negative | 3179025 - 3179663 | 22580.9 |
| lysr family transcriptional regulator | F126LOC_RS13795 | Not Available | Positive | 3179909 - 3180808 | 33621.8 |
| alpha/beta fold hydrolase | F126LOC_RS13800 | Not Available | Negative | 3180796 - 3181083 | 10515.5 |
| lysr family transcriptional regulator | F126LOC_RS13805 | Not Available | Positive | 3181208 - 3182122 | 34117.4 |
| flavin reductase family protein | F126LOC_RS13810 | Not Available | Negative | 3182148 - 3182738 | 21682.7 |
| duf1971 domain-containing protein | F126LOC_RS13815 | Not Available | Positive | 3183121 - 3183453 | 12652.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
