Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonate dehydrogenase | F126LOC_RS00575 | Not Available | Negative | 140912 - 141826 | 31644.3 |
| dna-binding transcriptional repressor ygbi | F126LOC_RS00580 | Not Available | Positive | 142164 - 142922 | 27256.0 |
| hypothetical protein | F126LOC_RS00585 | Not Available | Positive | 143143 - 143541 | 15167.0 |
| duf4225 domain-containing protein | F126LOC_RS00590 | Not Available | Negative | 143538 - 144386 | 32082.3 |
| hcp family type vi secretion system effector | F126LOC_RS00595 | Not Available | Negative | 144388 - 144867 | 18228.5 |
| hypothetical protein | F126LOC_RS00600 | Not Available | Positive | 145228 - 145644 | 15698.9 |
| duf1778 domain-containing protein | F126LOC_RS00605 | Not Available | Positive | 145754 - 146032 | 10667.7 |
| gnat family n-acetyltransferase | F126LOC_RS00610 | Not Available | Positive | 146023 - 146505 | 17510.3 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | F126LOC_RS00615 | Not Available | Positive | 146638 - 147972 | 48815.9 |
| sn-glycerol-3-phosphate abc transporter permease ugpa | F126LOC_RS00620 | Not Available | Positive | 148045 - 148932 | 33009.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
