Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase subunit alpha | F126LOC_RS13670 | Not Available | Positive | 3101615 - 3103765 | 78874.2 |
| citmhs family transporter | F126LOC_RS13675 | Not Available | Positive | 3104455 - 3105768 | 47045.4 |
| gntr family transcriptional regulator | F126LOC_RS13680 | Not Available | Positive | 3105877 - 3106770 | 34582.7 |
| dicarboxylate/amino acid:cation symporter | F126LOC_RS13685 | Not Available | Positive | 3107434 - 3108744 | 47157.6 |
| hypochlorite stress dna-binding transcriptional regulator hypt | F126LOC_RS13690 | Not Available | Negative | 3108832 - 3109731 | 34299.0 |
| aspartate/glutamate racemase family protein | F126LOC_RS13695 | Not Available | Positive | 3109971 - 3110687 | 26550.1 |
| pectate lyase | F126LOC_RS13700 | Not Available | Negative | 3110821 - 3111765 | 33621.4 |
| metq/nlpa family lipoprotein | F126LOC_RS13705 | Not Available | Negative | 3111990 - 3112802 | 29456.3 |
| response regulator transcription factor | F126LOC_RS13710 | Not Available | Positive | 3113262 - 3113891 | 22965.0 |
| mase1 domain-containing protein | F126LOC_RS13715 | Not Available | Positive | 3113895 - 3115472 | 59561.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
