Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | F126LOC_RS13570 | Not Available | Positive | 3072925 - 3073878 | 35203.8 |
| tonb-dependent receptor | F126LOC_RS13575 | Not Available | Positive | 3074139 - 3076817 | 98219.2 |
| heme acquisition protein hasa | F126LOC_RS13580 | Not Available | Positive | 3076935 - 3077552 | 21095.1 |
| type i secretion system permease/atpase | F126LOC_RS13585 | Not Available | Positive | 3077760 - 3079619 | 66417.3 |
| hlyd family type i secretion periplasmic adaptor subunit | F126LOC_RS13590 | Not Available | Positive | 3079684 - 3081042 | 49333.1 |
| tolc family outer membrane protein | F126LOC_RS13595 | Not Available | Positive | 3081045 - 3082400 | 50686.6 |
| anaerobic c4-dicarboxylate transporter | F126LOC_RS13600 | Not Available | Positive | 3083314 - 3084654 | 47976.3 |
| iron-containing alcohol dehydrogenase family protein | F126LOC_RS13605 | Not Available | Positive | 3084887 - 3085990 | 39793.6 |
| glutamate/aspartate:proton symporter gltp | F126LOC_RS13610 | Not Available | Negative | 3086072 - 3087388 | 47298.3 |
| hth-type transcriptional regulator cbl | F126LOC_RS13615 | Not Available | Negative | 3087884 - 3088837 | 35761.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
