Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amp nucleosidase | F126LOC_RS13520 | Not Available | Positive | 3060915 - 3062375 | 53770.7 |
| hypothetical protein | F126LOC_RS13525 | Not Available | Positive | 3062483 - 3062722 | 8468.28 |
| glycine betaine/l-proline transporter prop | F126LOC_RS13530 | Not Available | Negative | 3062785 - 3064287 | 54956.0 |
| arac family transcriptional regulator | F126LOC_RS13535 | Not Available | Negative | 3064561 - 3065553 | 37429.8 |
| class i sam-dependent methyltransferase | F126LOC_RS13540 | Not Available | Positive | 3065620 - 3066606 | 36055.1 |
| carboxylesterase/lipase family protein | F126LOC_RS13545 | Not Available | Positive | 3066832 - 3068376 | 55548.6 |
| putrescine aminotransferase | F126LOC_RS13550 | Not Available | Negative | 3068514 - 3069920 | 50967.5 |
| aminobutyraldehyde dehydrogenase | F126LOC_RS13555 | Not Available | Negative | 3070248 - 3071672 | 50866.0 |
| hypothetical protein | F126LOC_RS13560 | Not Available | Negative | 3071791 - 3071961 | 5985.71 |
| rna polymerase sigma factor | F126LOC_RS13565 | Not Available | Positive | 3072316 - 3072825 | 19762.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
