Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | F126LOC_RS13470 | Not Available | Negative | 3047579 - 3048715 | 41036.0 |
| abc transporter permease | F126LOC_RS13475 | Not Available | Positive | 3048953 - 3050542 | 57627.6 |
| abc transporter atp-binding protein | F126LOC_RS13480 | Not Available | Positive | 3050539 - 3051345 | 29684.0 |
| aryl-sulfate sulfotransferase | F126LOC_RS13485 | Not Available | Positive | 3051362 - 3053155 | 67378.1 |
| rpn family recombination-promoting nuclease/putative transposase | F126LOC_RS13490 | Not Available | Positive | 3053329 - 3054225 | 33994.1 |
| abc transporter atp-binding protein | F126LOC_RS13495 | Not Available | Positive | 3054426 - 3055274 | 29973.4 |
| abc transporter atp-binding protein | F126LOC_RS13500 | Not Available | Positive | 3055271 - 3056107 | 30531.2 |
| mdr family mfs transporter | F126LOC_RS13505 | Not Available | Positive | 3056191 - 3057438 | 44402.4 |
| abc transporter substrate-binding protein | F126LOC_RS13510 | Not Available | Positive | 3057449 - 3058960 | 53977.4 |
| abc transporter permease subunit | F126LOC_RS13515 | Not Available | Positive | 3058998 - 3060776 | 61840.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
