Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione-dependent disulfide-bond oxidoreductase | F126LOC_RS13370 | Not Available | Positive | 3022968 - 3023807 | 30941.6 |
| multidrug effflux mfs transporter | F126LOC_RS13375 | Not Available | Negative | 3023867 - 3025111 | 43924.8 |
| tetr family transcriptional regulator | F126LOC_RS13380 | Not Available | Positive | 3025238 - 3026491 | 46268.2 |
| tonb-dependent siderophore receptor | F126LOC_RS13385 | Not Available | Positive | 3026674 - 3028863 | 79555.9 |
| chemotaxis protein | F126LOC_RS13390 | Not Available | Negative | 3029023 - 3029994 | 35697.0 |
| duf3313 domain-containing protein | F126LOC_RS13395 | Not Available | Positive | 3030537 - 3031199 | 23712.1 |
| paraquat-inducible protein a | F126LOC_RS13400 | Not Available | Positive | 3031234 - 3031869 | 23189.2 |
| paraquat-inducible protein a | F126LOC_RS13405 | Not Available | Positive | 3031859 - 3032476 | 22572.0 |
| intermembrane transport protein pqib | F126LOC_RS13410 | Not Available | Positive | 3032473 - 3034119 | 60096.8 |
| membrane integrity-associated transporter subunit pqic | F126LOC_RS13415 | Not Available | Positive | 3034116 - 3034760 | 23273.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
