Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2058 domain-containing protein | F126LOC_RS13320 | Not Available | Negative | 3014742 - 3015281 | 20150.2 |
| cold-shock protein | F126LOC_RS13325 | Not Available | Negative | 3015461 - 3015943 | 17773.4 |
| glycoside hydrolase family 1 protein | F126LOC_RS13330 | Not Available | Negative | 3016105 - 3017541 | 53976.8 |
| helix-turn-helix domain-containing protein | F126LOC_RS13335 | Not Available | Negative | 3017742 - 3018197 | 17100.8 |
| mfs transporter | F126LOC_RS13340 | Not Available | Positive | 3018264 - 3019520 | 43057.1 |
| arsr/smtb family transcription factor | F126LOC_RS13345 | Not Available | Negative | 3019535 - 3019885 | 12986.7 |
| threonine/serine dehydratase | F126LOC_RS13350 | Not Available | Positive | 3019938 - 3020942 | 35276.5 |
| helix-turn-helix domain-containing protein | F126LOC_RS13355 | Not Available | Negative | 3020980 - 3021282 | 11126.6 |
| winged helix-turn-helix transcriptional regulator | F126LOC_RS13360 | Not Available | Negative | 3021649 - 3022089 | 16914.2 |
| nad(p)-dependent oxidoreductase | F126LOC_RS13365 | Not Available | Positive | 3022192 - 3022803 | 21603.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
