Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1365 domain-containing protein | F126LOC_RS13270 | Not Available | Negative | 3006056 - 3006793 | 29123.3 |
| nad(p)/fad-dependent oxidoreductase | F126LOC_RS13275 | Not Available | Negative | 3006795 - 3008057 | 47671.7 |
| sdr family nad(p)-dependent oxidoreductase | F126LOC_RS13280 | Not Available | Negative | 3008054 - 3008773 | 25770.3 |
| nuclear transport factor 2 family protein | F126LOC_RS13285 | Not Available | Negative | 3008770 - 3009204 | 16388.6 |
| merr family transcriptional regulator | F126LOC_RS13290 | Not Available | Negative | 3009433 - 3010161 | 27525.7 |
| oxidoreductase | F126LOC_RS13295 | Not Available | Negative | 3010260 - 3011150 | 31535.9 |
| gamma-glutamylcyclotransferase family protein | F126LOC_RS13300 | Not Available | Positive | 3011440 - 3011775 | 12382.3 |
| ymja family protein | F126LOC_RS13305 | Not Available | Negative | 3011903 - 3012148 | 9405.8 |
| duf1852 domain-containing protein | F126LOC_RS13310 | Not Available | Positive | 3012601 - 3013578 | 37315.5 |
| methionine synthase | F126LOC_RS13315 | Not Available | Positive | 3013609 - 3014640 | 38549.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
