Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| high-affinity branched-chain amino acid abc transporter atp-binding protein livf | F126LOC_RS00525 | Not Available | Positive | 126015 - 126716 | 25667.1 |
| plp-dependent aminotransferase family protein | F126LOC_RS00530 | Not Available | Positive | 126746 - 127936 | 44158.2 |
| methyl-accepting chemotaxis protein | F126LOC_RS00535 | Not Available | Negative | 128027 - 129673 | 59044.6 |
| methyl-accepting chemotaxis protein | F126LOC_RS00540 | Not Available | Negative | 130252 - 131922 | 59914.5 |
| methyl-accepting chemotaxis protein | F126LOC_RS00545 | Not Available | Negative | 132680 - 134350 | 59663.0 |
| methyl-accepting chemotaxis protein | F126LOC_RS00550 | Not Available | Negative | 134630 - 136309 | 59343.9 |
| gntp family transporter | F126LOC_RS00555 | Not Available | Negative | 136621 - 137979 | 46458.3 |
| 2-oxo-tetronate isomerase | F126LOC_RS00560 | Not Available | Negative | 138166 - 138954 | 29243.8 |
| 3-oxo-tetronate 4-phosphate decarboxylase | F126LOC_RS00565 | Not Available | Negative | 138988 - 139644 | 23788.4 |
| 3-oxo-tetronate kinase | F126LOC_RS00570 | Not Available | Negative | 139641 - 140915 | 45381.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
