Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS13225 | Not Available | Positive | 2995679 - 2999713 | 154585.0 |
| alpha/beta hydrolase | F126LOC_RS22375 | Not Available | Positive | 3000022 - 3000138 | 4404.2 |
| hypothetical protein | F126LOC_RS13230 | Not Available | Negative | 3000461 - 3000724 | 9728.26 |
| duf2778 domain-containing protein | F126LOC_RS13235 | Not Available | Negative | 3000693 - 3001220 | 19543.5 |
| hcp family type vi secretion system effector | F126LOC_RS13240 | Not Available | Negative | 3001251 - 3001718 | 17331.3 |
| ybga family protein | F126LOC_RS13245 | Not Available | Negative | 3002336 - 3003295 | 36756.8 |
| duf3833 domain-containing protein | F126LOC_RS13250 | Not Available | Negative | 3003309 - 3003836 | 20226.0 |
| hypothetical protein | F126LOC_RS13255 | Not Available | Negative | 3003833 - 3004360 | 19954.8 |
| duf2878 domain-containing protein | F126LOC_RS13260 | Not Available | Negative | 3004357 - 3004842 | 18337.4 |
| sam-dependent methyltransferase | F126LOC_RS13265 | Not Available | Negative | 3004839 - 3006059 | 46968.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
