Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| terb n-terminal domain-containing protein | F126LOC_RS13185 | Not Available | Positive | 2982241 - 2984550 | 84745.7 |
| atp-binding protein | F126LOC_RS13190 | Not Available | Positive | 2984554 - 2985867 | 48845.0 |
| dead/deah box helicase | F126LOC_RS13195 | Not Available | Positive | 2985864 - 2988062 | 81433.9 |
| hypothetical protein | F126LOC_RS22465 | Not Available | Negative | 2988126 - 2988254 | 4529.48 |
| duf6119 family protein | F126LOC_RS13205 | Not Available | Negative | 2989070 - 2990668 | 62383.0 |
| alpha/beta hydrolase | F126LOC_RS22365 | Not Available | Positive | 2990971 - 2991292 | 11993.9 |
| hypothetical protein | F126LOC_RS13210 | Not Available | Negative | 2991416 - 2992684 | 48630.1 |
| hypothetical protein | F126LOC_RS13215 | Not Available | Negative | 2992907 - 2993905 | 38738.8 |
| alpha/beta hydrolase | F126LOC_RS13220 | Not Available | Positive | 2994970 - 2995134 | 6351.73 |
| alpha/beta hydrolase | F126LOC_RS22370 | Not Available | Positive | 2995137 - 2995235 | 3703.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
