Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| virb10/trab/trbi family type iv secretion system protein | F126LOC_RS13135 | Not Available | Positive | 2971418 - 2972641 | 43861.6 |
| p-type dna transfer atpase virb11 | F126LOC_RS13140 | Not Available | Positive | 2972631 - 2973647 | 38538.1 |
| conjugal transfer protein | F126LOC_RS13145 | Not Available | Positive | 2973691 - 2973993 | 11222.8 |
| type iv secretory system conjugative dna transfer family protein | F126LOC_RS13150 | Not Available | Positive | 2974718 - 2976580 | 69369.1 |
| mobc family replication-relaxation protein | F126LOC_RS13155 | Not Available | Positive | 2976589 - 2977335 | 29082.5 |
| duf3916 domain-containing protein | F126LOC_RS13160 | Not Available | Positive | 2977532 - 2978074 | 20712.6 |
| hypothetical protein | F126LOC_RS13165 | Not Available | Negative | 2978237 - 2979235 | 38229.8 |
| ccdb family protein | F126LOC_RS13170 | Not Available | Negative | 2979659 - 2979973 | 11570.2 |
| type ii toxin-antitoxin system ccda family antitoxin | F126LOC_RS13175 | Not Available | Negative | 2979976 - 2980212 | 8928.44 |
| ardc family protein | F126LOC_RS13180 | Not Available | Negative | 2980532 - 2981476 | 34581.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
