Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine deaminase | F126LOC_RS12955 | Not Available | Positive | 2938417 - 2939307 | 32018.0 |
| nad-dependent malic enzyme | F126LOC_RS12960 | Not Available | Positive | 2939514 - 2941211 | 62677.9 |
| glutathione abc transporter permease gsid | F126LOC_RS12965 | Not Available | Negative | 2941270 - 2942175 | 33020.3 |
| glutathione abc transporter permease gsic | F126LOC_RS12970 | Not Available | Negative | 2942185 - 2943105 | 34086.9 |
| glutathione abc transporter substrate-binding protein gsib | F126LOC_RS12975 | Not Available | Negative | 2943214 - 2944758 | 56820.4 |
| dipeptide abc transporter atp-binding protein | F126LOC_RS12980 | Not Available | Negative | 2944784 - 2946685 | 70574.0 |
| molybdopterin molybdotransferase moea | F126LOC_RS12985 | Not Available | Positive | 2947162 - 2948397 | 43991.7 |
| molybdopterin-synthase adenylyltransferase moeb | F126LOC_RS12990 | Not Available | Positive | 2948400 - 2949158 | 27527.6 |
| nitroreductase family protein | F126LOC_RS12995 | Not Available | Positive | 2949259 - 2949858 | 22270.3 |
| lipid kinase | F126LOC_RS13000 | Not Available | Negative | 2949935 - 2950843 | 32758.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
