Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS12905 | Not Available | Negative | 2929262 - 2929954 | 26136.4 |
| hcp family type vi secretion system effector | F126LOC_RS12910 | Not Available | Negative | 2930036 - 2930515 | 17731.1 |
| dethiobiotin synthase | F126LOC_RS12915 | Not Available | Negative | 2930792 - 2931472 | 24618.7 |
| malonyl-acp o-methyltransferase bioc | F126LOC_RS12920 | Not Available | Negative | 2931465 - 2932226 | 27998.3 |
| 8-amino-7-oxononanoate synthase | F126LOC_RS12925 | Not Available | Negative | 2932207 - 2933364 | 42002.9 |
| biotin synthase biob | F126LOC_RS12930 | Not Available | Negative | 2933404 - 2934441 | 38634.2 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | F126LOC_RS12935 | Not Available | Positive | 2934537 - 2935841 | 47873.8 |
| gh12 family glycosyl hydrolase domain-containing protein | F126LOC_RS12940 | Not Available | Positive | 2936118 - 2936912 | 29581.4 |
| cida/lrga family protein | F126LOC_RS12945 | Not Available | Positive | 2937139 - 2937546 | 14962.0 |
| cidb/lrgb family autolysis modulator | F126LOC_RS12950 | Not Available | Positive | 2937546 - 2938241 | 24520.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
