Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | F126LOC_RS12805 | Not Available | Negative | 2908300 - 2909151 | 31127.6 |
| feccd family abc transporter permease | F126LOC_RS12810 | Not Available | Negative | 2909164 - 2910195 | 35775.1 |
| feccd family abc transporter permease | F126LOC_RS12815 | Not Available | Negative | 2910188 - 2911177 | 34270.2 |
| abc transporter substrate-binding protein | F126LOC_RS12820 | Not Available | Negative | 2911174 - 2912193 | 38011.9 |
| tonb-dependent receptor | F126LOC_RS12825 | Not Available | Negative | 2912183 - 2914288 | 78095.6 |
| secretion protein hlyd | F126LOC_RS12830 | Not Available | Positive | 2914842 - 2915870 | 37528.1 |
| atp-binding cassette domain-containing protein | F126LOC_RS12835 | Not Available | Positive | 2915863 - 2917605 | 63599.8 |
| abc transporter permease | F126LOC_RS12840 | Not Available | Positive | 2917598 - 2918773 | 43845.0 |
| abc transporter permease | F126LOC_RS12845 | Not Available | Positive | 2918783 - 2919913 | 41840.4 |
| bax inhibitor-1 family protein | F126LOC_RS12850 | Not Available | Negative | 2919986 - 2920693 | 25916.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
