Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homocysteine s-methyltransferase | F126LOC_RS12755 | Not Available | Negative | 2896360 - 2897307 | 33777.9 |
| s-methylmethionine permease | F126LOC_RS12760 | Not Available | Negative | 2897300 - 2898712 | 51147.4 |
| trna dihydrouridine(16) synthase dusc | F126LOC_RS12765 | Not Available | Negative | 2898901 - 2899833 | 34558.8 |
| epoxyqueuosine reductase queh | F126LOC_RS12770 | Not Available | Positive | 2900043 - 2900714 | 26052.7 |
| abc transporter substrate-binding protein | F126LOC_RS12775 | Not Available | Negative | 2900765 - 2902360 | 59138.5 |
| peptidase t | F126LOC_RS12780 | Not Available | Positive | 2902501 - 2903730 | 44815.1 |
| helix-turn-helix domain-containing protein | F126LOC_RS12785 | Not Available | Negative | 2903813 - 2904685 | 32913.1 |
| dmt family transporter | F126LOC_RS12790 | Not Available | Positive | 2904801 - 2905700 | 33001.7 |
| atp-dependent rna helicase rhle | F126LOC_RS12795 | Not Available | Negative | 2905739 - 2907151 | 51458.8 |
| iuca/iucc family c-terminal-domain containing protein | F126LOC_RS12800 | Not Available | Negative | 2907498 - 2908310 | 30450.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
