Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(966)-n(2))-methyltransferase | F126LOC_RS00475 | Not Available | Negative | 115626 - 116201 | 21316.6 |
| signal recognition particle-docking protein ftsy | F126LOC_RS00480 | Not Available | Positive | 116551 - 118008 | 52783.3 |
| cell division atp-binding protein ftse | F126LOC_RS00485 | Not Available | Positive | 118014 - 118685 | 24543.9 |
| permease-like cell division protein ftsx | F126LOC_RS00490 | Not Available | Positive | 118675 - 119643 | 35221.2 |
| rna polymerase sigma factor rpoh | F126LOC_RS00495 | Not Available | Positive | 119999 - 120856 | 32724.9 |
| aspartate 1-decarboxylase autocleavage activator panm | F126LOC_RS00500 | Not Available | Negative | 120921 - 121370 | 17048.7 |
| branched-chain amino acid abc transporter substrate-binding protein | F126LOC_RS00505 | Not Available | Positive | 121775 - 122887 | 39461.2 |
| high-affinity branched-chain amino acid abc transporter permease livh | F126LOC_RS00510 | Not Available | Positive | 123045 - 123971 | 32933.4 |
| high-affinity branched-chain amino acid abc transporter permease livm | F126LOC_RS00515 | Not Available | Positive | 123968 - 125242 | 46473.2 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livg | F126LOC_RS00520 | Not Available | Positive | 125239 - 126009 | 28239.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
