Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine abc transporter substrate-binding protein glnh | F126LOC_RS12540 | Not Available | Positive | 2856576 - 2857322 | 27284.8 |
| glutamine abc transporter permease glnp | F126LOC_RS12545 | Not Available | Positive | 2857349 - 2858008 | 24085.5 |
| glutamine abc transporter atp-binding protein glnq | F126LOC_RS12550 | Not Available | Positive | 2858005 - 2858727 | 26519.2 |
| m3 family metallopeptidase | F126LOC_RS12555 | Not Available | Negative | 2858779 - 2860647 | 70857.9 |
| dna-binding protein ybib | F126LOC_RS12560 | Not Available | Negative | 2860734 - 2861702 | 35055.5 |
| hypothetical protein | F126LOC_RS12565 | Not Available | Negative | 2862005 - 2862160 | 5736.71 |
| protease inhibitor inh/omp19 family protein | F126LOC_RS12690 | Not Available | Negative | 2882144 - 2882455 | 11245.4 |
| serralysin family metalloprotease | F126LOC_RS12695 | Not Available | Negative | 2882561 - 2883991 | 51251.1 |
| atp-dependent dna helicase ding | F126LOC_RS12700 | Not Available | Negative | 2884512 - 2886611 | 79492.7 |
| arac family transcriptional regulator | F126LOC_RS12705 | Not Available | Positive | 2886794 - 2887639 | 32279.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
