Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell envelope biogenesis protein ompa | F126LOC_RS12490 | Not Available | Positive | 2847022 - 2847900 | 31374.4 |
| gyri-like domain-containing protein | F126LOC_RS12495 | Not Available | Negative | 2848055 - 2848519 | 17562.6 |
| dhcw motif cupin fold protein | F126LOC_RS12500 | Not Available | Negative | 2848752 - 2849081 | 12533.7 |
| rhodanese family protein | F126LOC_RS12505 | Not Available | Negative | 2849153 - 2849689 | 19238.7 |
| emmdr/yeeo family multidrug/toxin efflux mate transporter | F126LOC_RS12510 | Not Available | Positive | 2850094 - 2851494 | 50945.7 |
| mfs transporter | F126LOC_RS12515 | Not Available | Negative | 2851539 - 2852708 | 41363.4 |
| outer membrane protein ompx | F126LOC_RS12520 | Not Available | Negative | 2853001 - 2853516 | 18194.2 |
| threonine/homoserine exporter rhta | F126LOC_RS12525 | Not Available | Positive | 2853893 - 2854780 | 31139.3 |
| adenylate kinase | F126LOC_RS12530 | Not Available | Negative | 2854768 - 2855319 | 22054.2 |
| dna starvation/stationary phase protection protein dps | F126LOC_RS12535 | Not Available | Positive | 2855682 - 2856185 | 18478.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
