Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna pseudouridine(516) synthase rsua | F126LOC_RS12440 | Not Available | Negative | 2837558 - 2838253 | 26108.1 |
| yech family metal-binding protein | F126LOC_RS12445 | Not Available | Positive | 2838478 - 2838717 | 8752.4 |
| dead/deah box helicase | F126LOC_RS12450 | Not Available | Positive | 2838720 - 2840480 | 66486.7 |
| 50s ribosomal protein l25 | F126LOC_RS12455 | Not Available | Positive | 2840616 - 2840900 | 10392.6 |
| duf1624 domain-containing protein | F126LOC_RS12460 | Not Available | Positive | 2841000 - 2842148 | 43726.9 |
| nucleoid-associated protein yejk | F126LOC_RS12465 | Not Available | Negative | 2842228 - 2843238 | 38086.9 |
| yejl family protein | F126LOC_RS12470 | Not Available | Positive | 2843459 - 2843689 | 8396.13 |
| lps biosynthesis-modulating metalloenzyme yejm | F126LOC_RS12475 | Not Available | Positive | 2843704 - 2845452 | 66433.6 |
| Trna-pro | Not Available | Not Available | Positive | 2845531 - 2845607 | Not Available |
| anti-virulence regulator cigr family protein | F126LOC_RS12485 | Not Available | Negative | 2845735 - 2846202 | 16355.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
